Tag Archives: DNA

Analysis of Dinosaur Bone Cells Confirms Ancient Protein Preservation

By Guest PostOctober 26, 2012Scienceancient dinosaur, antibodies, backbone, bone cell, brachylophosaurus canadensis, cellular structure, collagen, dinosaurian, DNA, dna molecule, evolutionary change, fibrous material, fibrous matrix, histochemistry, marshall bern, mary schweitzer, mass spectrometry, microbe, microscopy, north Carolina, origin, osteocytes, ostrich osteocytes, palo alto, parc, phex, protein, reactivity, research center, sample contamination, state university, tyrannosaurus rex, vertebrate, wenxia zheng

A team of researchers from North Carolina State University and the Palo Alto Research Center (PARC) has found more evidence for the preservation of ancient dinosaur proteins, including reactivity to antibodies that target specific proteins normally found in bone cells of vertebrates. These results further rule out sample contamination, and help solidify the case for preservation of cells – and possibly DNA – in ancient remains.

Dr. Mary Schweitzer, professor of marine, earth and atmospheric sciences with a joint appointment at the North Carolina Museum of Natural Sciences, first discovered what appeared to be preserved soft tissue in a 67-million-year-old Tyrannosaurus Rex in 2005. Subsequent research revealed similar preservation in an even older (about 80-million-year-old)Brachylophosaurus canadensis. In 2007 and again in 2009, Schweitzer and colleagues used chemical and molecular analyses to confirm that the fibrous material collected from the specimens was collagen. (more…)

Omega-3 Supplements May Slow a Biological Effect of Aging

By Guest PostOctober 5, 2012Healthaging, alzheimer's disease, american, arthritis, balance, beom seuk hwang, biological process, blood, blood cell, cardiovascular system, cell, coronary, daily intake, dha, diabetes, diet, DNA, docosahexaenoic acid, eicosapentaenoic acid, elissa epel, elizabeth blackburn, epa, f2 isoprostanes, fatty acid, fish oil, free radical, good fat, heart, heart disease, il 6, immune system, inflammation, inflammatory marker, interleukin 6, jan kiecolt glaser, jue lin, martha belury, ohio state, oil, omega 6, omega-3, oxidative stress, placebo group, polyunsaturated fatty acid, ratio, rebecca andridge, reduce, ron glaser, segment, supplement, telomeres, type 2, white, william malarkey

COLUMBUS, Ohio – Taking enough omega-3 fatty acid supplements to change the balance of oils in the diet could slow a key biological process linked to aging, new research suggests.

The study showed that most overweight but healthy middle-aged and older adults who took omega-3 supplements for four months altered a ratio of their fatty acid consumption in a way that helped preserve tiny segments of DNA in their white blood cells. (more…)

Sticky Paper Offers Cheap, Easy Solution for Paper-Based Diagnostics

By Guest PostOctober 4, 2012Scienceacidity, antibodies, arthur yu, biological molecule, chemical trick, daniel ratner, diabetes, diagnostic, disease, divinyl sulfone, DNA, fluorescent ricin, galactose, george whitesides, global, harvard university, health research, immune system, industrial solvent, jing shang, malaria, medical test, nitrocellulose, oldest technology, paper, paper stick, paul yager, plain paper, poison, pregnancy test, protein, rodrigo andrade, sticky membrane, university, Washington, ziploc bag

A current focus in global health research is to make medical tests that are not just cheap, but virtually free. One such strategy is to start with paper – one of humanity’s oldest technologies – and build a device like a home-based pregnancy test that might work for malaria, diabetes or other diseases.

A University of Washington bioengineer recently developed a way to make regular paper stick to medically interesting molecules. The work produced a chemical trick to make paper-based diagnostics using plain paper, the kind found at office supply stores around the world. (more…)

Latest JBEI Startup to Speed Up Biotech Industry

By Guest PostOctober 3, 2012Scienceautocad, berkeley lab, biofuels, biology, chemicals, cutting edge, design, DNA, dna manipulation, eduardo abeliuk, electrical engineering, expressing, inertia, iso27001, j5 software, jbei, majed abolfazli, medicine, metabolic pathway, mike fero, modern cloning, molecular biology, nathan hillson, organism, pharmchem, protocol, qb3, san francisco, Science, sequencing, splicing, stanford university, teselagen

TeselaGen’s DNA construction technology makes genetic engineering cheaper and faster.

Sequencing, splicing and expressing DNA may seem to be the quintessence of cutting-edge science—indeed DNA manipulation has revolutionized fields such as biofuels, chemicals and medicine. But in fact, the actual process can still be tedious and labor-intensive, something Lawrence Berkeley National Laboratory (Berkeley Lab) scientist Nathan Hillson learned the hard way.

After struggling for two days to design a protocol to put together a genetic circuit with 10 pieces of DNA—using a spreadsheet as his primary tool—he was dismayed to discover that an outside company could have done the whole thing, including parts and labor, for lower cost than him ordering the oligonucleotides himself. “I learned two things: one, I never wanted to go through that process again, and two, it’s extremely important to do the cost-effectiveness calculation,” said Hillson, a biochemist who also directs the synthetic biology program at the Berkeley Lab-led Joint BioEnergy Institute (JBEI). “So that was the genesis of the j5 software. This is the perfect thing to teach a computer to do.” (more…)

Cracking the Oyster’s Code

By Guest PostSeptember 23, 2012Natureair exposure, analysis, atlantic, bioengineering project, cell, death, delaware, DNA, dynamic environment, evolution, factor, genetic code, genome, genome project, gulf coast, heat shock, immune response, oyster, pacific oyster, parasites, pathogen, patrick m gaffney, stress, survival, temperature fluctuation, toxic chemical, toxic metal, university

International team of scientists finds adaptations to stress in oyster genome

When it comes to stress, oysters know how to deal. The tough-shelled mollusks can survive temperature fluctuations, toxic metals and exposure to air, and a new study of their genetic makeup is helping to explain how.

An international team of scientists, including the University of Delaware’s Patrick M. Gaffney, professor of marine biosciences, sequenced the genome of the Pacific oyster, Crassostrea gigas, in a Nature paper published on Sept. 19. (more…)

Berkeley Lab Scientists Create First 3-D Model of a Protein Critical to Embryo Development

By Guest PostSeptember 21, 2012Science3d model, aebp2, alessio maiolica, angstroms, arm1, arm2, berkeley lab, birth defect, cancer, chromatin environment, claudio ciferri, complex, complex 2, crystal structure, DNA, electron microscopy, eva nogales, franz herzog, function, gabriel lander, human, mass spectrometry, mechanism, model, molecular architecture, nucleosome, polycomb, prc2, progression, protein, protein biochemistry, repressive, ruedi aebersold, therapeutic drug

The first detailed and complete picture of a protein complex that is tied to human birth defects as well as the progression of many forms of cancer has been obtained by an international team of researchers led by scientists with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab). Knowing the architecture of this protein, PRC2, for Polycomb Repressive Complex 2, should be a boon to its future use in the development of new and improved therapeutic drugs.

“We present a complete molecular organization of human PRC2 that offers an invaluable structural context for understanding all of the previous biochemical and functional data that has been collected on this complex,” says Berkeley Lab biophysicist Eva Nogales, an electron microscopy expert who led this research. “Our model should also be an invaluable tool for the design of new experiments aimed at asking detailed questions about the mechanisms that enable PRC2 to function and how those mechanisms might be exploited.” (more…)

Evolution is as Complicated as 1-2-3

By Guest PostSeptember 20, 2012Scienceanalysis, bacteria, bacterial evolution, biological function, citrate, citrate molecule, DNA, e coli, evolution, function, genomics, glucose, jeff barrick, michigan, module, mutation, mutational piece, organism, oxygen, potentiation, puzzle, richard lenski, state university, traditional diet, zachary blount

EAST LANSING, Mich. — A team of researchers at Michigan State University has documented the step-by-step process in which organisms evolve new functions.

The results, published in the current issue of Nature, are revealed through an in-depth, genomics-based analysis that decodes how E. coli bacteria figured out how to supplement a traditional diet of glucose with an extra course of citrate. (more…)

Beacons Light up Stem Cell Transformation

By Guest PostSeptember 12, 2012Sciencealpl, bglap, biotechnology, bone cell, bone specific, brown university, chathuraka jayasuriya, differentiation, DNA, eric darling, fluorescence, gene, gene col1a1, gene expression, glowing, green spot, hetal desai, indu voruganti, medicine treatment, messenger rna, mg 63, milestone, molecular beacon, mrna, qian chen, regenerative, stem cell, tissue

In a new study, Brown University researchers demonstrate a new tool for visually tracking in real-time the transformation of a living population of stem cells into cells of a specific tissue. The “molecular beacons,” which could advance tissue engineering research, light up when certain genes are expressed and don’t interfere with the development or operation of the stem cells.

PROVIDENCE, R.I. [Brown University] — A novel set of custom-designed “molecular beacons” allows scientists to monitor gene expression in living populations of stem cells as they turn into a specific tissue in real-time. The technology, which Brown University researchers describe in a new study, provides tissue engineers with a potentially powerful tool to discover what it may take to make stem cells transform into desired tissue cells more often and more quickly. That’s a key goal in improving regenerative medicine treatments. (more…)