Tag Archives: berkeley lab

A Clock that Will Last Forever

By Guest PostSeptember 24, 2012Science3d solid, 4d crystal, berkeley lab, clock, coulomb repulsion, crystal, crystallization, electric field, electrical charge, energy state, entanglement, entropy, forever, frank wilczek, haitao quan, heat death, ice, ion trap, luming duan, particle, peng zhang, periodic structure, phenomena, physics, quantum, quantum world, ring crystal, salt, snowflake, Space, spatial, structure, thermodynamic equilibrium, time, tongcang li, universe, wow factor, xiang zhang, xiaobo yin, zhang qi yin, zhe xuan gong

Berkeley Lab Researchers Propose a Way to Build the First Space-Time Crystal

Imagine a clock that will keep perfect time forever, even after the heat-death of the universe. This is the “wow” factor behind a device known as a “space-time crystal,” a four-dimensional crystal that has periodic structure in time as well as space. However, there are also practical and important scientific reasons for constructing a space-time crystal. With such a 4D crystal, scientists would have a new and more effective means by which to study how complex physical properties and behaviors emerge from the collective interactions of large numbers of individual particles, the so-called many-body problem of physics. A space-time crystal could also be used to study phenomena in the quantum world, such as entanglement, in which an action on one particle impacts another particle even if the two particles are separated by vast distances.

A space-time crystal, however, has only existed as a concept in the minds of theoretical scientists with no serious idea as to how to actually build one – until now. An international team of scientists led by researchers with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab) has proposed the experimental design of a space-time crystal based on an electric-field ion trap and the Coulomb repulsion of particles that carry the same electrical charge. (more…)

Berkeley Lab Scientists Create First 3-D Model of a Protein Critical to Embryo Development

By Guest PostSeptember 21, 2012Science3d model, aebp2, alessio maiolica, angstroms, arm1, arm2, berkeley lab, birth defect, cancer, chromatin environment, claudio ciferri, complex, complex 2, crystal structure, DNA, electron microscopy, eva nogales, franz herzog, function, gabriel lander, human, mass spectrometry, mechanism, model, molecular architecture, nucleosome, polycomb, prc2, progression, protein, protein biochemistry, repressive, ruedi aebersold, therapeutic drug

The first detailed and complete picture of a protein complex that is tied to human birth defects as well as the progression of many forms of cancer has been obtained by an international team of researchers led by scientists with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab). Knowing the architecture of this protein, PRC2, for Polycomb Repressive Complex 2, should be a boon to its future use in the development of new and improved therapeutic drugs.

“We present a complete molecular organization of human PRC2 that offers an invaluable structural context for understanding all of the previous biochemical and functional data that has been collected on this complex,” says Berkeley Lab biophysicist Eva Nogales, an electron microscopy expert who led this research. “Our model should also be an invaluable tool for the design of new experiments aimed at asking detailed questions about the mechanisms that enable PRC2 to function and how those mechanisms might be exploited.” (more…)

Salt Seeds Clouds in the Amazon Rainforest

By Guest PostSeptember 13, 2012Environmentabsorption, aerosol particle, airborne particle, als beamline, Amazon, amazon jungle, amazonian, asci, ballistospores, berkeley lab, biomass, brazil, chemistry, christopher pohlker, david kilcoyne, deep, emission, fine particle, fog, forest canopy, fungi fire, gas phase, Germany, graphitic, institute, isoprene, leaves, liquid droplet, manaus, mary gilles, max planck, meinrat andreae, microscopy, moisture, morning, mpic, natural forest, nexafs, organic carbon, organism, osmosis, photon, potassium level, potassium salt, rainforest, sacs, seed, soluble particle, stxm, sugar alcohol, terpenes, tree resin, trees, ulrich pöschl, water vapor, xray

It’s morning, deep in the Amazon jungle. In the still air innumerable leaves glisten with moisture, and fog drifts through the trees. As the sun rises, clouds appear and float across the forest canopy … but where do they come from? Water vapor needs soluble particles to condense on. Airborne particles are the seeds of liquid droplets in fog, mist, and clouds.

To learn how aerosol particles form in the Amazon, Mary Gilles of the Chemical Sciences Division at the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) and David Kilcoyne of the Lab’s Advanced Light Source (ALS) worked with Christopher Pöhlker of Germany’s Max Planck Institute for Chemistry (MPIC) as part of an international team of scientists led by MPIC’s Meinrat Andreae and Ulrich Pöschl. They analyzed samples of naturally formed aerosols collected above the forest floor, deep in the rainforest. (more…)

Forcing the Molecular Bond Issue

By Guest PostSeptember 6, 2012Scienceadsorb, aerosol droplets, aleksandr noy, antibody, berkeley lab, binding free energy, biosensing assay, data, dfs, dynamic force spectroscopy, energy barrier, force spectra, formation, interaction, intermolecular bond, jim deyoreo, material, molecular bond, molecular foundry, molecular system, molecule, nanoscience center, nonlinear force, property, raymond friddle, rupture, single bond model, standard model, synthetic analogue, synthetic polymer, torsional force

New and Improved Model of Molecular Bonding from Researchers at Berkeley Lab’s Molecular Foundry

Material properties and interactions are largely determined by the binding and unbinding of their constituent molecules, but the standard model used to interpret data on the formation and rupturing of molecular bonds suffers from inconsistencies. A collaboration of researchers led by a scientist at the U.S Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab) has developed a first-of-its-kind model for providing a comprehensive description of the way in which molecular bonds form and rupture. This model enables researchers to predict the “binding free energy” of a given molecular system, which is key to predicting how that molecule will interact with other molecules.

“Molecular binding and unbinding events are much simpler than we have been led to believe from the standard model over the past decade,” says Jim DeYoreo, a scientist with the Molecular Foundry, a DOE nanoscience center at Berkeley Lab who was one of the leaders of this research. “With our new model, we now have a clear means for measuring one of the most important parameters governing how materials and molecules bind together.” (more…)

Form, Function and Folding: In Collaboration with Berkeley Lab, a Team of Scientists Move Toward Rational Design of Artificial Proteins

By Guest PostAugust 26, 2012Scienceamino acid, barney yoo, berkeley lab, bioinspired nanomaterial, blind structure, function, glenn butterfoss, ilya chorny, jonathan jaworski, ken dill, kent kirshenbaum, modeling, molecular foundry, n alkyl, natural selection, new york university, peptoid molecule, peptoid trimers, prediction, protein, protein sequence, qm, qm calculation, remd, richard bonneau, ronald zuckermann, stony brook university, structure, synthetic cousin, temple university, vincent voelz, xray crystallography

In the world of proteins, form defines function. Based on interactions between their constituent amino acids, proteins form specific conformations, folding and twisting into distinct, chemically directed shapes. The resulting structure dictates the proteins’ actions; thus accurate modeling of structure is vital to understanding functionality.

Peptoids, the synthetic cousins of proteins, follow similar design rules. Less vulnerable to chemical or metabolic breakdown than proteins, peptoids are promising for diagnostics, pharmaceuticals, and as a platform to build bioinspired nanomaterials, as scientists can build and manipulate peptoids with great precision. But to design peptoids for a specific function, scientists need to first untangle the complex relationship between a peptoid’s composition and its function-defining folded structure. (more…)

Doing Science to Teach Science

By Guest PostAugust 22, 2012Education, Scienceallen boltz, ashok gadgil, autumn chapman, berkeley darfur stove, berkeley lab, brito guedes, california, cookstove, dna repair, high school, iisme, jill fuss, monique, nigel quinn, particulate, pe teacher, polymerase chain reactions, san joaquin basin, Science, skin deformities, sophomore chemistry, teacher, thermodynamic

A summer of research at Berkeley Lab gives high school teachers a jump start on science.

High school science teachers face a perennial problem: how to make science real and exciting to their students. But for Berkeley High School teacher Allen Boltz, who spent eight weeks at Lawrence Berkeley National Laboratory working in a research lab, he will be returning to his classroom this fall a near rock star.

“This experience gives a lot of credibility to the teaching profession,” he said. “To my students, me doing research here would be the equivalent to their PE teacher being a professional athlete.” (more…)

A Direct Look at Graphene

By Guest PostAugust 5, 2012Scienceandrey shytov, atom, berkeley lab, carbon atom, coulomb potential, dirac quasiparticles, electrical conductor, electron, factor, graphene, graphene device, graphene properties, hexagonally patterned, honeycomb, lattice, michael crommie, paul dirac, speed of light, stm, victor brar, yang wang

Direct Imaging by Berkeley Lab Researchers Confirms the Importance of Electron-Electron Interactions in Graphene

Perhaps no other material is generating as much excitement in the electronics world as graphene, sheets of pure carbon just one atom thick through which electrons can race at nearly the speed of light – 100 times faster than they move through silicon. Superthin, superstrong, superflexible and superfast as an electrical conductor, graphene has been touted as a potential wonder material for a host of electronic applications, starting with ultrafast transistors. For the vast potential of graphene to be fully realized, however, scientists must first learn more about what makes graphene so super. The latest step in this direction has been taken by researchers with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab) and the University of California (UC) Berkeley.

Michael Crommie, a physicist who holds joint appointments with Berkeley Lab’s Materials Sciences Division and UC Berkeley’s Physics Department, led a study in which the first direct observations at microscopic lengths were recorded of how electrons and holes respond to a charged impurity – a single Coulomb potential – placed on a gated graphene device. The results provide experimental support to the theory that interactions between electrons are critical to graphene’s extraordinary properties. (more…)

Measuring the “Other” Greenhouse Gases: Higher Than Expected Levels of Methane in California

By Guest PostJune 16, 2012Environmentanthropogenic, atmospheric lifetime, berkeley lab, black carbon, california, carb, carbon dioxide, central valley, ch4 emissions, climate pollutant, CO2, coal mines, decomposition, environment policy, fossil fuel, fraction, global warming, greenhouse gas, halocarbon gases, landfills, livestock ranches, man made source, map, marc l fischer, methane, methane emissions, methane signals, natural sources, nitrous oxide, noaa, organic matter, refrigerants, sacramento, seongeun jeong, soot, sound energy, spatial, temporal resolution, united states, walnut grove

Berkeley Lab scientists develop new method for evaluating short-lived pollutants.

New research from Lawrence Berkeley National Laboratory (Berkeley Lab) has found that levels of methane—a potent greenhouse gas emitted from many man-made sources, such as coal mines, landfills and livestock ranches—are at least one-and-a-half times higher in California than previously estimated.

Working with scientists from the National Oceanic and Atmospheric Administration (NOAA) Berkeley Lab scientists Marc L. Fischer and Seongeun Jeong combined highly accurate methane measurements from a tower with model predictions of expected methane signals to revise estimated methane emissions from central California. They found that annually averaged methane emissions in California were 1.5 to 1.8 times greater than previous estimates, depending on the spatial distribution of the methane emissions. (more…)