Berkeley Lab scientists join an international collaboration to understand how archaea and bacteria work together deep in a cold sulfur spring
In the fall of 2010, Hoi-Ying Holman of the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) was approached by an international team researching a mysterious microbial community discovered deep in cold sulfur springs in southern Germany.
“They told me what they were doing and said, ‘We know what you contributed to the oil-spill research,’” recalls Holman, who heads the Chemical Ecology group in Berkeley Lab’s Earth Sciences Division. “They wondered if I could help them determine the biochemistry of their microbe samples.” (more…)
ANN ARBOR — A nanoscale coating that’s at least 95 percent air repels the broadest range of liquids of any material in its class, causing them to bounce off the treated surface, according to the University of Michigan engineering researchers who developed it.
In addition to super stain-resistant clothes, the coating could lead to breathable garments to protect soldiers and scientists from chemicals, and advanced waterproof paints that dramatically reduce drag on ships. (more…)
Plant and animal species are shifting their geographic ranges and the timing of their life events – such as flowering, laying eggs or migrating – at faster rates than researchers documented just a few years ago, according to a technical report on biodiversity and ecosystems used as scientific input for the 2013 Third National Climate Assessment.
The report, Impacts of Climate Change on Biodiversity, Ecosystems, and Ecosystem Services, synthesizes the scientific understanding of the way climate change is affecting ecosystems, ecosystem services and the diversity of species, as well as what strategies might be used by natural resource practitioners to decrease current and future risks. More than 60 federal, academic and other scientists, including the lead authors from the U.S. Geological Survey, the National Wildlife Federation and Arizona State University in Tempe, authored the assessment. (more…)
Joint BioEnergy Institute Researchers Find New Access to Abundant Biomass for Advanced Biofuels
After cellulose, xylan is the most abundant biomass material on Earth, and therefore represents an enormous potential source of stored solar energy for the production of advance biofuels. A major roadblock, however, has been extracting xylan from plant cell walls. Researchers with the U.S. Department of Energy (DOE)’s Joint BioEnergy Institute (JBEI) have taken a significant step towards removing this roadblock by identifying a gene in rice plants whose suppression improves both the extraction of xylan and the overall release of the sugars needed to make biofuels.
The newly identified gene – dubbed XAX1 – acts to make xylan less extractable from plant cell walls. JBEI researchers, working with a mutant variety of rice plant – dubbed xax1 – in which the XAX1 gene has been “knocked-out” found that not only was xylan more extractable, but saccharification – the breakdown of carbohydrates into releasable sugars – also improved by better than 60-percent. Increased saccharification is key to more efficient production of advanced biofuels. (more…)
EAST LANSING, Mich. — Warmer oceans in the future could significantly alter populations of phytoplankton, tiny organisms that could have a major impact on climate change.
In the current issue of Science Express, Michigan State University researchers show that by the end of the 21st century, warmer oceans will cause populations of these marine microorganisms to thrive near the poles and may shrink in equatorial waters. Since phytoplankton play a key role in the food chain and the world’s cycles of carbon, nitrogen, phosphorous and other elements, a drastic drop could have measurable consequences. (more…)
MENLO PARK, Calif. — As much as 44 billion tons of nitrogen and 850 billion tons of carbon stored in arctic permafrost, or frozen ground, could be released into the environment as the region begins to thaw over the next century as a result of a warmer planet according to a new study led by the U.S. Geological Survey. This nitrogen and carbon are likely to impact ecosystems, the atmosphere, and water resources including rivers and lakes. For context, this is roughly the amount of carbon stored in the atmosphere today.
The release of carbon and nitrogen in permafrost could exacerbate the warming phenomenon and will impact water systems on land and offshore according to USGS scientists and their domestic and international collaborators. The previously unpublished nitrogen figure is useful for scientists who are making climate predictions with computer climate models, while the carbon estimate is consistent and gives more credence to other scientific studies with similar carbon estimates. (more…)
New research led by Yale University scientists suggests that a rocky planet twice Earth’s size orbiting a nearby star is a diamond planet.
“This is our first glimpse of a rocky world with a fundamentally different chemistry from Earth,” said lead researcher Nikku Madhusudhan, a Yale postdoctoral researcher in physics and astronomy. “The surface of this planet is likely covered in graphite and diamond rather than water and granite.”
The paper reporting the findings has been accepted for publication in the journal Astrophysical Journal Letters. (more…)
Berkeley Lab Researchers Develop New Tool for Making Genetic Engineering of Microbial Circuits Reliably Predictable
Synthetic biology is the latest and most advanced phase of genetic engineering, holding great promise for helping to solve some of the world’s most intractable problems, including the sustainable production of energy fuels and critical medical drugs, and the safe removal of toxic and radioactive waste from the environment. However, for synthetic biology to reach its promise, the design and construction of biological systems must be as predictable as the assembly of computer hardware.
An important step towards attaining a higher degree of predictability in synthetic biology has been taken by a group of researchers with the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) under the leadership of computational biologist Adam Arkin. Arkin and his team have developed an “adaptor” that makes the genetic engineering of microbial components substantially easier and more predictable by converting regulators of translation into regulators of transcription in Escherichia coli. Transcription and translation make up the two-step process by which the coded instructions of genes are used to synthesize proteins. (more…)
