Tag Archives: protein

It’s in the Genes: Research Pinpoints How Plants Know When to Flower

By Guest PostMay 27, 2012Nature, Scienceandrew millar, arabidopsis, barley, benjamin to, biofuels, biology, circadian clock, factors, fkf1 protein, flowering locus t, flowering plants, know, mathematical model, molecular changes, molecular events, photoreceptor, plant, plants, prediction, protein, robert smith, sandra hines, scientists, sequence, shoot apex, sunlight, takato imaizumi, time keeping mechanism, university of edinburgh, university of washington, uw lab, wheat, when to flower, young hun song

Scientists believe they’ve pinpointed the last crucial piece of the 80-year-old puzzle of how plants “know” when to flower.

Determining the proper time to flower, important if a plant is to reproduce successfully, involves a sequence of molecular events, a plant’s circadian clock and sunlight.

Understanding how flowering works in the simple plant used in this study – Arabidopsis – should lead to a better understanding of how the same genes work in more complex plants grown as crops such as rice, wheat and barley, according to Takato Imaizumi, a University of Washington assistant professor of biology and corresponding author of a paper in the May 25 issue of the journal Science. (more…)

Study: Heart Damage after Chemo Linked to Stress in Cardiac Cells

By Guest PostMay 22, 2012Healthblocking, breast cancer, cancer cell, cardiac damage, cardiomyocytes, cellular level, chemotherapy, doxorubicin, drug, gene, govindasamy ilangovan, heart, heart muscle cells, heat shock factor 1, hsf 1, karthikeyan krishnamurthy, kaushik vedam, mdr1, multidrug resistance 1, nf kb, ohio state university, protein, ragu kanagasabai

COLUMBUS, Ohio – Blocking a protein in the heart that is produced under stressful conditions could be a strategy to prevent cardiac damage that results from chemotherapy, a new study suggests.

Previous research has suggested that up to a quarter of patients who receive the common chemotherapy drug doxorubicin are at risk of developing heart failure later in life. Exactly how that heart damage is done remains unclear.

In this study, scientists identified a protein called heat shock factor-1 (HSF-1) as a likely source of chemotherapy-related heart damage in mice and cell cultures. Heat shock factor-1 is known to be induced by stress – in this case, the chemotherapy treatment itself. (more…)

New Twist on Ancient Math Problem Could Improve Medicine, Microelectronics

By Guest PostMay 15, 2012Scienceancient math problem, carolyn phillips, filling problem, hidden facet, medicine, microelectronics, microprocessor, Nanotechnology, pentagon, protein, radiation beam, sanskrit manuscript, sharon glotzer, silicon chip, solution, starfish, three dimensions, traps, treating tumor, two dimensions, university of connecticut, university of michigan

ANN ARBOR, Mich.— A hidden facet of a math problem that goes back to timeworn Sanskrit manuscripts has just been exposed by nanotechnology researchers at the University of Michigan and the University of Connecticut.

It turns out we’ve been missing a version of the famous “packing problem,” and its new guise could have implications for cancer treatment, secure wireless networks, microelectronics and demolitions, the researchers say.

Called the “filling problem,” it seeks the best way to cover the inside of an object with a particular shape, such as filling a triangle with discs of varying sizes. Unlike the traditional packing problem, the discs can overlap. It also differs from the “covering problem” because the discs can’t extend beyond the triangle’s boundaries. (more…)

Brighter, Smaller Probes to Uncover the Secret Lives of Proteins

By Guest PostMay 10, 20121 commentSciencealexis ostrowski, andrew mueller, berkeley lab, bruce cohen, cellular mechanism, daniel gargas, delia milliron, disease, elan katz, emory chan, erbium, function, gang han, imagine tracking, james schuck, lanthanide, live cell, los angeles, molecule, nanocrystal, nanoparticle, nayf4, photobleach, protein, radio transmitter, sodium yttrium fluoride, vistamar school, wanda robot, ytterbium

Berkeley Lab scientists create nanoparticle probes that may lead to a better understanding of diseases

Imagine tracking a deer through a forest by clipping a radio transmitter to its ear and monitoring the deer’s location remotely. Now imagine that transmitter is the size of a house, and you understand the problem researchers may encounter when they try to use nanoparticles to track proteins in live cells.

Understanding how a protein moves around a cell helps researchers understand the protein’s function and the cellular mechanisms for making and processing proteins. This information also helps researchers study disease, which at a cellular level may mean that a protein is malfunctioning, stops being made, or is sent to the wrong part of the cell. But nanoparticle probes that are too big can disrupt a protein’s normal activities. (more…)

Molecular Spectroscopy Tracks Living Mammalian Cells in Real Time as They Differentiate

By Guest PostMay 2, 2012Scienceals, alzheimer's disease, amino acid residues, apoptosis, bacteria, berkeley lab, carbohydrates, cell change, cell death, children, diabetes, fibroblasts, fluorescent dyes, fourier transform infrared, ftir, function, hans bechtel, hoi ying, hyperspectromicroscopy, ir, kevin loutherback, liang chen, lipids, macular degeneration, michael martin, mitochondrial diseases, pc12, phosphorylation, phosphorylation process, power plant, protein, rafael gomez sjoberg, retina, san diego, serine, spectromicroscopy, threonine, tyrosine, ultraviolet, university of california, zhao hao

Berkeley Lab scientists demonstrate the promise of synchrotron infrared spectroscopy of living cells for medical applications

Knowing how a living cell works means knowing how the chemistry inside the cell changes as the functions of the cell change. Protein phosphorylation, for example, controls everything from cell proliferation to differentiation to metabolism to signaling, and even programmed cell death (apoptosis), in cells from bacteria to humans. It’s a chemical process that has long been intensively studied, not least in hopes of treating or eliminating a wide range of diseases. But until now the close-up view – watching phosphorylation work at the molecular level as individual cells change over time – has been impossible without damaging the cells or interfering with the very processes that are being examined.

“To look into phosphorylation, researchers have labeled specific phosphorylated proteins with antibodies that carry fluorescent dyes,” says Hoi-Ying Holman of the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab). “That gives you a great image, but you have to know exactly what to label before you can even begin.” (more…)

Locked RNA Editing Yields Odd Fly Behavior

By Guest PostApril 26, 2012Scienceabiotic factor, als, arthur sugden, asli sahin, brown university, cell, charles lawrence, dadar, enzyme adar, epilepsy, factor, fruit fly, function, genetic, jacquelyn dorsky, james jepson, lauren alpert, locking down, lou gehrigs disease, nucleus, organism, phenomenon, protein, rna, robert reenan, suicidal depression, temperature, wallflowers, yiannis savva

At the level of proteins, organisms can adapt by editing their RNA — and an editor can even edit itself. Brown University scientists working with fruit flies found that “locking down” the self-editing process at two extremes created some strange behaviors. They also found that the process is significantly affected by temperature.

PROVIDENCE, R.I. [Brown University] — Because a function of RNA is to be translated as the genetic instructions for the protein-making machinery of cells, RNA editing is the body’s way of fine-tuning the proteins it produces, allowing us to adapt. The enzyme ADAR, which does this editing job in the nervous system of creatures ranging from mice to men, even edits itself. In a new study that examined the self-editing process and locked it down at two extremes in fruit flies, Brown University scientists found some surprising insights into how this “fine-tuning of the fine-tuner” happens, including bizarre behavioral effects that come about when the self-editor can’t edit. (more…)

Inspired by Insects

By Guest PostApril 25, 2012Sciencebioactive hydrogel matrices, biomimetic, cell adhesion, cicadas, degradation, elastic, frequency, gel, grasshopper, hmscs, human mesenchymal stem cells, kristi kiick, microsecond, multipotent cells, phonation, polypeptide hydrogel, protein, radio wave, regenerative power, resilin, speak, susan thibeault, timothy mcculloch, tissue, torsional wave apparatus, united states, university of delaware, vibratory stimulation, vocal folds, voice problem, words, xinqiao jia

For treatment of vocal fold disorders, UD researchers look to insect protein

A one-inch long grasshopper can leap a distance of about 20 inches. Cicadas can produce sound at about the same frequency as radio waves. Fleas measuring only millimeters can jump an astonishing 100 times their height in microseconds. How do they do it? They make use of a naturally occurring protein called resilin.

Resilin is a protein in the composite structures found in the leg and wing joints, and sound producing organs of insects. Highly elastic, it responds to exceptionally high rates of speed and demonstrates unmatched resilience after being stretched or deformed. (more…)

First Atomic-Scale Real-Time Movies of Platinum Nanocrystal Growth in Liquids

By Guest PostApril 23, 2012Sciencealex zettl, alivisatos zettl collaboration, anisotropic particle, atomic scale, berkeley lab, crystallographic direction, daniel hellebusch, DNA, electron beam, electron microscope, gold tem mesh, grapheme, graphene liquid cells, growth, growth trajectory, jeong yong lee, jong min yuk, jungwon park, kwanpyo kim, liquid, lynn yarris, membrane, metal, michael crommie, movie, nanocrystal, nanometer scale, nanoparticle growth, ncem, paul alivisatos, peter ercius, platinum nanocrystal, protein, real-time, solution, subnanometer resolution, tem grid, transmission electron microscope, university of california

Berkeley Scientists Create Graphene Liquid Cells for Electron Microscopy Studies of Nanocrystal Formation

They won’t be coming soon to a multiplex near you, but movies showing the growth of platinum nanocrystals at the atomic-scale in real-time have blockbuster potential. A team of scientists with the Lawrence Berkeley National Laboratory (Berkeley Lab) and the University of California (UC) Berkeley has developed a technique for encapsulating liquids of nanocrystals between layers of graphene so that chemical reactions in the liquids can be imaged with an electron microscope. With this technique, movies can be made that provide unprecedented direct observations of physical, chemical and biological phenomena that take place in liquids on the nanometer scale. (more…)