Tag Archives: function

Study Reveals Declining Influence of High Impact Factor Journals

The most prestigious peer-reviewed journals in the world, such as Cell, Nature, Science, and the Journal of the American Medical Association (JAMA), have less and less influence amongst scientists, according to a paper co-authored by Vincent Larivière, a professor at the University of Montreal’s School of Library and Information Sciences. He questions the relationship between journal “impact factor” and number of citations subsequently received by papers.

“In 1990, 45% of the top 5% most cited articles were published in the top 5% highest impact factor journals. In 2009, this rate was only 36%,” Larivière said. “This means that the most cited articles are published less exclusively in high impact factor journals.” The proportion of these articles published in major scholarly journals has sharply declined over the last twenty years. His study was based on a sample of more than 820 million citations and 25 million articles published between 1902 and 2009. The findings were published in the Journal of the American Society for Information Science and Technology. (more…)

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Folding Funnels Key to Biomimicry

Berkeley Lab Finding that Protein Folding Funnels Also Apply to Self-Assembly Should Benefit Biomimicry and Nanosynthesis

Proteins are able to self-assemble into a wide range of highly ordered structures that feature a diverse array of properties. Through biomimicry – technological innovation inspired by nature – humans hope to emulate proteins and produce our own version of self-assembling molecules. A key to accomplishing this is understanding how protein-folding – a process critical to the form and function of a protein – is extended from individual proteins to complex assemblies.

Researchers with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab) have now shown that a concept widely accepted as describing the folding of a single individual protein is also applicable to the self-assembly of multiple proteins. Their findings provide important guidelines for future biomimicry efforts, particularly for device fabrication and nanoscale synthesis. (more…)

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Barley getting by

Sequencing the barley genome will sow many benefits

Some 10,000 years ago, people found they didn’t have to live as nomads, hunting and gathering all their food. In the Fertile Crescent, they started planting crops.

The Fertile Crescent extended from the Nile Valley and along the eastern Mediterranean Coast, through the Tigris and Euphrates valleys of Mesopotamia and down to the Persian Gulf. There, the foundation crops of the Western World were first domesticated. (more…)

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A Welcome Predictability

Berkeley Lab Researchers Develop New Tool for Making Genetic Engineering of Microbial Circuits Reliably Predictable

Synthetic biology is the latest and most advanced phase of genetic engineering, holding great promise for helping to solve some of the world’s most intractable problems, including the sustainable production of energy fuels and critical medical drugs, and the safe removal of toxic and radioactive waste from the environment. However, for synthetic biology to reach its promise, the design and construction of biological systems must be as predictable as the assembly of computer hardware.

An important step towards attaining a higher degree of predictability in synthetic biology has been taken by a group of researchers with the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) under the leadership of computational biologist Adam Arkin. Arkin and his team have developed an “adaptor” that makes the genetic engineering of microbial components substantially easier and more predictable by converting regulators of translation into regulators of transcription in Escherichia coli. Transcription and translation make up the two-step process by which the coded instructions of genes are used to synthesize proteins. (more…)

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Berkeley Lab Scientists Create First 3-D Model of a Protein Critical to Embryo Development

The first detailed and complete picture of a protein complex that is tied to human birth defects as well as the progression of many forms of cancer has been obtained by an international team of researchers led by scientists with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab). Knowing the architecture of this protein,  PRC2, for Polycomb Repressive Complex 2, should be a boon to its future use in the development of new and improved therapeutic drugs.

“We present a complete molecular organization of human PRC2 that offers an invaluable structural context for understanding all of the previous biochemical and functional data that has been collected on this complex,” says Berkeley Lab biophysicist Eva Nogales, an electron microscopy expert who led this research. “Our model should also be an invaluable tool for the design of new experiments aimed at asking detailed questions about the mechanisms that enable PRC2 to function and how those mechanisms might be exploited.” (more…)

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Evolution is as Complicated as 1-2-3

EAST LANSING, Mich. — A team of researchers at Michigan State University has documented the step-by-step process in which organisms evolve new functions.

The results, published in the current issue of Nature, are revealed through an in-depth, genomics-based analysis that decodes how E. coli bacteria figured out how to supplement a traditional diet of glucose with an extra course of citrate. (more…)

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Gardener’s Delight Offers Glimpse into the Evolution of Flowering Plants

The Pink Double Dandy peony, the Double Peppermint petunia, the Doubled Strawberry Vanilla lily and nearly all roses are varieties cultivated for their double flowers.

The blossoms of these and other such plants are lush with extra petals in place of the parts of the flower needed for sexual reproduction and seed production, meaning double flowers – though beautiful – are mutants and usually sterile.

The genetic interruption that causes that mutation helped scientists in the 1990s pinpoint the genes responsible for normal development of sexual organs stamens and carpels in the plant Arabidopsis thaliana, long used as a plant model by biologists. (more…)

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More Sophisticated Wiring, Not Just a Bigger Brain, Helped Humans Evolve Beyond Chimps

Human and chimp brains look anatomically similar because both evolved from the same ancestor millions of years ago. But where does the chimp brain end and the human brain begin?

A new UCLA study pinpoints uniquely human patterns of gene activity in the brain that could shed light on how we evolved differently than our closest relative. The identification of these genes could improve understanding of human brain diseases like autism and schizophrenia, as well as learning disorders and addictions.

The research appears Aug. 22 in the advance online edition of the journal Neuron. (more…)

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