Tag Archives: enzyme

New Insight into an Emerging Genome-Editing Tool

By Guest PostMarch 11, 2014Scienceactinomyces naeslundii, anacas9, bacteria, bacterial immune system, berkeley lab, biochemist, biophysicist, cas9, cas9 enzymes, crispr, david taylor, DNA, enzyme, eva nogales, fuguo jiang, genetic element, genetically engineered, genome editing tool, guide rna, jennifer doudna, microbes, spycas, streptococcus pyogenes

Berkeley Researchers Show Expanded Role for Guide RNA in Cas9 Interactions with DNA

The potential is there for bacteria and other microbes to be genetically engineered to perform a cornucopia of valuable goods and services, from the production of safer, more effective medicines and clean, green, sustainable fuels, to the clean-up and restoration of our air, water and land. Cells from eukaryotic organisms can also be modified for research or to fight disease. To achieve these and other worthy goals, the ability to precisely edit the instructions contained within a target’s genome is a must. A powerful new tool for genome editing and gene regulation has emerged in the form of a family of enzymes known as Cas9, which plays a critical role in the bacterial immune system. Cas9 should become an even more valuable tool with the creation of the first detailed picture of its three-dimensional shape by researchers with the Lawrence Berkeley National Laboratory (Berkeley Lab) and the University of California (UC) Berkeley. (more…)

Fatty Acids Crucial to Embryonic Development

By Guest PostDecember 20, 2013Scienceacs, acsl4, acyl coa synthetases, bmp signaling pathway, different tissue types, early embryo, embryo implantation, embryonic development, enzyme, fatty acids, fruit fly, Germany, metabolism, polyunsaturated fatty acid, rosa miyares, steven farber, university of cologne, uterus development

Baltimore, MD— One classical question in developmental biology is how different tissue types arise in the correct position of the developing embryo. While one signaling pathway that controls this process has been well described, unexpected findings from a team led by Carnegie’s Steven Farber reveal the importance of polyunsaturated fatty acid metabolism in this process. It is published online December 12 in Developmental Cell.

Fatty acids serve as sources of energy, the building materials of cellular membranes, and as signals for sending messages between cells. Enzymes are needed to activate free fatty acids so that they are useful for cellular processes. The enzymes that perform this function are called acyl-CoA synthetases, often shortened to ACS. (more…)

Edited RNA + invasive DNA add individuality

By Guest PostNovember 18, 2013Scienceadar, adar hamstrug flies, aicardi goutieres syndrome, brown university, chromatin, edited rna, enzyme, genetic oddity, genome, hoppel transposons, humans, invasive dna, james jepson, rachel whitaker, red color gene, rna in humans, transposons, yiannis savva, yoah jen chang

A study in Nature Communications finds that an enzyme that edits RNA may loosen the genome’s control over invasive snippets of DNA that affect how genes are expressed. In fruit flies, that newly understood mechanism appears to contribute to differences among individuals such as eye color and life span.

PROVIDENCE, R.I. [Brown University] — The story of why we are all so different goes well beyond the endless mixing and matching of DNA through breeding. A new study in the journal Nature Communications, for instance, reports a new molecular mechanism of individual variation found in fruit flies that uses components operating in a wide variety of species, including humans. (more…)

Scientists Reveal Quirky Feature of Lyme Disease Bacteria

By Guest PostApril 15, 2013Environmentantioxidant enzyme, bloodstream, borrelia burgdorferi, borrelia enzymes, cape cod, catalyze, christine vazquez, cobalt, defense mechanism, enzyme, frank gherardini, hillary clark, hormone, immune system, j daphne aguirre, james posey, jhu, johns hopkins university, liver produces hepcidin, lyme disease bacteria, mak saito, manganese, metal trafficking, metalloproteins, oceanographic institution, pathogen, pathogens of iron, proteins, shaina palmere, superoxide dismutase, university of georgia, university of texas, valeria culotta, vitamin supplements, whoi, woods hole, zinc

Unlike most organisms, they don’t need iron, but they crave manganese

Scientists have confirmed that the pathogen that causes Lyme Disease—unlike any other known organism—can exist without iron, a metal that all other life needs to make proteins and enzymes. Instead of iron, the bacteria substitute manganese to make an essential enzyme, thus eluding immune system defenses that protect the body by starving pathogens of iron.

To cause disease, Borrelia burgdorferi requires unusually high levels of manganese, scientists at Johns Hopkins University (JHU), Woods Hole Oceanographic Institution (WHOI), and the University of Texas reported. Their study, published March 22, 2013, in The Journal of Biological Chemistry, may explain some mysteries about why Lyme Disease is slow-growing and hard to detect and treat. The findings also open the door to search for new therapies to thwart the bacterium by targeting manganese. (more…)

Gene therapy may aid failing hearts

By Guest PostApril 4, 2013Health2 deoxy atp, adenosine 5 triphosphate, alya red, american heart association, animal study, atp, barcelona superconducting center, cardiac muscle fibers, charles murry, datp, DNA, electromechanical computational model, embryonic growth, enzyme, failing hearts, gene therapy, heart attacks, heart conditions, heart failure, heart muscle function, mechanically stressed, michael regnier, muscle contraction, nucleotide, university of washington

The potential of gene therapy to boost heart muscle function was explored in a recent University of Washington animal study. The findings suggest that it might be possible to use this approach to treat patients whose hearts have been weakened by heart attacks and other heart conditions.

Michael Regnier, UW professor and vice chair of bioengineering, Charles Murry, director of the Center for Cardiovascular Biology and co-director of the Institute for Stem Cell and Regenerative Medicine, and Sarah Nowakowski, a UW graduate student in bioengineering, led the study. The findings appeared online March 25 in the Proceedings of the National Academy of Sciences. (more…)

Study Shows How Vitamin E Can Help Prevent Cancer

By Guest PostMarch 30, 2013Healthakt, anti cancer effect, anti cancer property, cancer cell survival, cancer prevention, chemical analysis, ching shih chen, enzyme, formulation, gujarat, hao chieh chiu, India, mutation, naval kapuriya, optimize, phlpp1, prevent cancer, protein, pten gene, saurashtra university, tocopherols, treatment, tumor cell death, vitamin e

COLUMBUS, Ohio – Researchers have identified an elusive anti-cancer property of vitamin E that has long been presumed to exist, but difficult to find.

Many animal studies have suggested that vitamin E could prevent cancer, but human clinical trials following up on those findings have not shown the same benefits. (more…)

Revealing the Secrets of Motility in Archaea

By Guest PostFebruary 24, 2013Scienceabrahjyoti ghosh, adenosine triphosphate, archaea, assembling archaella, atomic resolution, atp, atp in solution, atpase, bacterial flagellum, bacterial type, berkeley lab, c terminal domain, crystallography, ctd, domain of life, dynamic play, e coli, energy, enzyme, established model systems, filamentary grappling hook, flab filament, flah eye, flai, flai genes, flai protein structure, gareth williams, generate energy, Germany, glue, human cells, human gut, hyper flagellated, hyper motile mutants, iv pilus, john tainer, max planck institute, microbiota, microorganisms, motility, motor, mpi, n terminal domain, ntd, phosphate, protein structure, release, saxs, secretion of proteins, sonja verena albers, sulfolobus acidocaldarius, terrestrial microbiology, xray diffraction

Scientists from Berkeley Lab and the Max Planck Institute for Terrestrial Microbiology analyze a unique microbial motor

The protein structure of the motor that propels archaea has been characterized for the first time by a team of scientists from the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) and Germany’s Max Planck Institute (MPI) for Terrestrial Microbiology.

The motility structure of this third domain of life has long been called a flagellum, a whip-like filament that, like the well-studied bacterial flagellum, rotates like a propeller. But although the archaeal structure has a similar function, it is so profoundly different in structure, genetics, and evolution that the researchers argue it deserves its own name: archaellum. (more…)

Aging Cells Lose Their Grip on DNA Rogues

By Guest PostFebruary 3, 2013Scienceabigail peterson, aging bodies, aging cells, balls of protein, barbara mcclintock, brown university, chromatin, chromosomes, computational biologist, desirable genes, DNA, edward peckham, eliza hamm, enzyme, essential genes, euchromatin formations, faire, genetic material, genome, genomic havoc, heterochromatin, heterochromatin prison system, high stakes warfare, hiv drugs, human fibroblast cells, human retrotransposons, jayameenakshi manivannan, jill kreiling, john sedivy, l1, marco de cecco, mobile strands, molecular parasites, nicola neretti, nobel prize, nucleosomes, parasitic strands, reverse transcriptases, rna, sara hillenmeyer, senescent, senescent cells, steven criscione, technique, transposable elements, transposons, transposons in maize, useful genes

Transposable elements are mobile strands of DNA that insert themselves into chromosomes with mostly harmful consequences. Cells try to keep them locked down, but in a new study, Brown University researchers report that aging cells lose their ability to maintain this control. The result may be a further decline in the health of senescent cells and of the aging bodies they compose.

PROVIDENCE, R.I. [Brown University] — Even in our DNA there is no refuge from rogues that prey on the elderly. Parasitic strands of genetic material called transposable elements — transposons — lurk in our chromosomes, poised to wreak genomic havoc. Cells have evolved ways to defend themselves, but in a new study, Brown University researchers describe how cells lose this ability as they age, possibly resulting in a decline in their function and health. (more…)