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SOFS Take to Water

By Guest PostJanuary 5, 2014Science2d honeycomb, aka chemistry, berkeley lab, chemical signals, DNA, double helix, emergence of nanotechnology, force, metal organic frameworks, mofs, molecule, non covalent bonds, saxs, sofs, solubility in water, supramolecular chemistry, supramolecular organic frameworks, van der waals, xin zhao, yi liu, zhan ting li

Researchers at Berkeley Lab’s Molecular Foundry Create First Soluble 2D Supramolecular Organic Frameworks

Supramolecular chemistry, aka chemistry beyond the molecule, in which molecules and molecular complexes are held together by non-covalent bonds, is just beginning to come into its own with the emergence of nanotechnology. Metal-organic frameworks (MOFs) are commanding much of the attention because of their appetite for greenhouse gases, but a new player has joined the field – supramolecular organic frameworks (SOFs). Researchers with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab) have unveiled the first two-dimensional SOFs that self-assemble in solution, an important breakthrough that holds implications for sensing and separation technologies, energy sciences, and, perhaps most importantly, biomimetics. (more…)

Comparing Proteins at a Glance

By Guest PostMay 23, 2013Scienceatp hydrolysis, berkeley lab, big puzzle, cancer chemotherapy, car spin, comparing proteins, cynthia mcmurray, en masse, function follows form, glance, greg hura, helen budworth, imaging technique, kevin dyer, macromolecules, michal hammel, multiple proteins, mutation, problematic dna, protein structures, robert rambo, saxs, xray analytical technique

Berkeley Lab Researchers Unveil Technique for Easy Comparisons of Proteins in Solution

A revolutionary X-ray analytical technique that enables researchers at a glance to identify structural similarities and differences between multiple proteins under a variety of conditions has been developed by researchers with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab). As a demonstration, the researchers used this technique to gain valuable new insight into a protein that is a prime target for cancer chemotherapy.

“Proteins and other biological macromolecules are moving machines whose power is often derived from how their structural conformations change in response to their environment,” says Greg Hura, a scientist with Berkeley Lab’s Physical Biosciences Division. “Knowing what makes a protein change has incredible value, much like knowing that stepping on a gas pedal makes the wheels of a car spin.” (more…)

Bold Move Forward in Molecular Analyses

By Guest PostMay 21, 2013Scienceabsolute scale, berkeley lab, cell biology, concentration, control, data collection, dataset, john tainer, macromolecules, molecular analyses, molecular machines, nanoparticle, neutrons, protein, robert rambo, sans, sas, sas analysis, sas based statistic, saxs, small angle scattering, solution, structural state, volume of correlation

Berkeley Lab Researchers Develop New Metrics for X-ray and Neutron Analysis of Flexible Macromolecules

A dramatic leap forward in the ability of scientists to study the structural states of macromolecules such as proteins and nanoparticles in solution has been achieved by a pair of researchers with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab). The researchers have developed a new set of metrics for analyzing data acquired via small angle scattering (SAS) experiments with X-rays (SAXS) or neutrons (SANS). Among other advantages, this will reduce the time required to collect data by up to 20 times.

“SAS is the only technique that provides a complete snapshot of the thermodynamic state of macromolecules in a single image,” says Robert Rambo, a scientist with Berkeley Lab’s Physical Biosciences Division, who developed the new SAS metrics along with John Tainer of Berkeley Lab’s Life Sciences Division and the Scripps Research Institute. (more…)

Revealing the Secrets of Motility in Archaea

By Guest PostFebruary 24, 2013Scienceabrahjyoti ghosh, adenosine triphosphate, archaea, assembling archaella, atomic resolution, atp, atp in solution, atpase, bacterial flagellum, bacterial type, berkeley lab, c terminal domain, crystallography, ctd, domain of life, dynamic play, e coli, energy, enzyme, established model systems, filamentary grappling hook, flab filament, flah eye, flai, flai genes, flai protein structure, gareth williams, generate energy, Germany, glue, human cells, human gut, hyper flagellated, hyper motile mutants, iv pilus, john tainer, max planck institute, microbiota, microorganisms, motility, motor, mpi, n terminal domain, ntd, phosphate, protein structure, release, saxs, secretion of proteins, sonja verena albers, sulfolobus acidocaldarius, terrestrial microbiology, xray diffraction

Scientists from Berkeley Lab and the Max Planck Institute for Terrestrial Microbiology analyze a unique microbial motor

The protein structure of the motor that propels archaea has been characterized for the first time by a team of scientists from the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) and Germany’s Max Planck Institute (MPI) for Terrestrial Microbiology.

The motility structure of this third domain of life has long been called a flagellum, a whip-like filament that, like the well-studied bacterial flagellum, rotates like a propeller. But although the archaeal structure has a similar function, it is so profoundly different in structure, genetics, and evolution that the researchers argue it deserves its own name: archaellum. (more…)

Tag Archives: saxs

SOFS Take to Water

Comparing Proteins at a Glance

Bold Move Forward in Molecular Analyses

Revealing the Secrets of Motility in Archaea