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River Mystery Solved

By Guest PostJune 5, 2011Environmentbacteria, biofilms, biogeochemical processes, blooms of didymo, Chile, didymo, didymo growth, didymosphenia geminata, freshwater algae, mats, microbes, microenvironment, national science foundation, new zealand, nutrients, oligotrophic, oliogotrophic streams, p v sundareshwar, phosphorus, rapid creek, rivers, rock, south dakota school of mines and technology, species, streams, tim kratz, uncommon environmental phenomena, unpolluted waterways, water bodies in the southern hemisphere

*Scientists discover how “Didymo” algae bloom in pristine waters with few nutrients*

The pristine state of unpolluted waterways may be their downfall, according to research results published in a paper this week in the journal Geophysical Research Letters.

A species of freshwater algae that lives in streams and rivers, called Didymo for Didymosphenia geminata, is able to colonize and dominate the bottoms of some of the world’s cleanest waterways–precisely because they are so clear. (more…)

It Takes a Community of Soil Microbes to Protect Plants From Disease

By Guest PostMay 15, 2011Environment, Scienceactinobacteria, archaea, bacteria, berkeley lab, burkholderia, complex microbial network, coral reefs, deepwater horizon spill, disease, dna sequences, dutch scientists, environmental mysteries, gary andersen, gulf of mexico, immune system, mammals, pathogens, phylochip, plants, potato, psuedomonas, puerto rico, rathmann family foundation, rhizoctonia solani, rice, root fungus, soil, soil microbes, sugar beet, todd desantis, types of bacteria, vegetables, xanthomonas, yvette piceno

*Berkeley Lab scientists decipher immune system for plants beneath our feet*

Those vegetables you had for dinner may have once been protected by an immune system akin to the one that helps you fight disease. Scientists from the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) and the Netherland’s Wageningen University found that plants rely on a complex community of soil microbes to defend themselves against pathogens, much the way mammals harbor a raft of microbes to avoid infections.

The scientists deciphered, for the first time, the group of microbes that enables a patch of soil to suppress a plant-killing pathogen. Previous research on the phenomenon of disease-suppressive soil had identified one or two pathogen-fighting microbes at work. (more…)

Pollution Triggers Genetic Resistance Mechanism in a Coastal Fish

By Guest PostFebruary 24, 20112 commentsEnvironmentacushnet river estuary, ahr2, amino acids, antibiotics, atlantic tomcod, bacteria, diana franks, Environment, evolutionary change, fish, fish populations, general electric facilities, genetic receptor, genetic resistance, hudson environment, hudson river, insecticides, insects, isaac wirgin, mark hahn, natural selection, new york, pahs, PCBs, polychlorinated biphenyls, polycyclic aromatic hydrocarbons, protein, receptor gene, stress factors, superfund basic research, tomcod, toxicity, vertebrate population

For 30 years, two General Electric facilities released about 1.3 million pounds of polychlorinated biphenyls (PCBs) into New York’s Hudson River, devastating and contaminating fish populations. Some 50 years later, one type of fish—the Atlantic tomcod—has not only survived but appears to be thriving in the hostile Hudson environment.

Researchers from Woods Hole Oceanographic Institution (WHOI) have joined colleagues from New York University (NYU) and NOAA to investigate this phenomenon and report that the tomcod living in the Hudson River have undergone a rapid evolutionary change in developing a genetic resistance to PCBs. (more…)

Like Humans, Amoebae Pack a Lunch Before They Travel

By Guest PostJanuary 25, 2011Nature, Scienceagriculture, amoebae, bacteria, beneficial bacteria, biologists, david queller, debra brock, dictyostellum discoideum, farmer amoebae, george gilchrist, harmful bacteria, joan strassmann, migratory systems, slime molds, social amoebae, strains of bacteria, tracy douglas, tuberculosis bacteria

*Amoebae increase survival odds through rudimentary form of agriculture; finding has implications for human diseases*

Some amoebae do what many people do. Before they travel, they pack a lunch.

In results of a study reported in the journal Nature, evolutionary biologists Joan Strassmann and David Queller of Rice University show that long-studied social amoebae Dictyostellum discoideum (commonly known as slime molds) increase their odds of survival through a rudimentary form of agriculture. (more…)

‘Undersea Methane Could be Contributor to Increased Ocean Acidity’

By Guest PostDecember 7, 2010Environmentacidity, algae, bacteria, bottom of the ocean, carbon dioxide, chris osburn, CO2, cold seeps, degradation, dissolved organic carbon, doc, fluids, marine science, methane, methane-derived doc, microbial processing, ocean, ocean acidification, oceanic microorganisms, pacific ocean, phytoplankton, seawater, sediments, undersea, undersea ecosystems

A North Carolina State University researcher is part of a team which has found that methane from “cold seeps” – undersea areas where fluids bubble up through sediments at the bottom of the ocean – could be contributing to the oceans’ increasing acidity and stressing already delicate undersea ecosystems.

Oceanic microorganisms and bacteria survive by consuming dissolved organic carbon, or DOC. A byproduct of this consumption is CO2 – carbon dioxide – which, in large enough concentrations, makes seawater more acidic. (more…)

How Pathogens Hijack Host Plants

By Guest PostNovember 27, 20101 commentSciencearabidopsis, bacteria, cell membrane, cells, diabetes, fluorescence resonance energy transfer, frank white, fret, fungi, global crop, infestation, li-qing chen, mustard, mutation, novel transporters, organism, pathogen infection, pathogenic bacteria, pathogens, plant nutrients, pore proteins, protein genes, sensor-based technology, sugar efflux, sugar-pumping mechanism, sweets

Palo Alto, CA — Infestation by bacteria and other pathogens result in global crop losses of over $500 billion annually. A research team led by the Carnegie Institution’s Department of Plant Biology developed a novel trick for identifying how pathogens hijack plant nutrients to take over the organism. They discovered a novel family of pores that transport sugar out of the plant. Bacteria and fungi hijack the pores to access the plant sugar for food. The first goal of any pathogen is to access the host’s food supply to allow them to reproduce in large numbers. This is the first time scientists have a direct handle on controlling the food supply to pathogens and thus a new means to prevent a wide range of crop diseases and losses. (more…)

Vaccine for Urinary Tract Infections is One Step Closer

By Guest PostNovember 14, 2010Healthantibiotic resistance, bacteria, urinary tract infections, vaccine

Study sheds light on what E. coli genes are doing inside the body during infection

E. coli bacteria. Image credit: Amy Simms, Ph.D

ANN ARBOR, Mich. — Urinary tract infections are a painful, recurring problem for millions of women. They are also getting more dangerous as bacteria develop resistance to the most common treatments.

Scientists from the University of Michigan have moved one step closer to a vaccine that could prevent a majority of urinary tract infections, which are caused by E. coli bacteria. Using a genetic technique rarely used to look at infections in human hosts, the researchers studied how the E. coli bacteria operate and discovered key differences between how the bacteria’s genes behave in women and how they behave in mice used in experiments.

Their findings, published online Nov. 11 in PLoS Pathogens, could lead to developments that would save billions in health care costs and millions of doctors’ visits and hospitalizations from urinary tract infections each year. (more…)

Scientists identify key enzyme in microbial immune system

By Guest PostSeptember 10, 20102 commentsSciencearchaea, bacteria, berkeley lab, Bill and Melinda Gates foundation, clustered regularly interspaced short palindromic repea, crispr, crrna molecule, csy4 enzyme, DNA, doudna group, genetic element, jennifer doudna, microbes, movie, nucleic acid, nucleic acid-based immune system, plasmids, rachel haurwitz, terminator

Imagine a war in which you are vastly outnumbered by an enemy that is utterly relentless – attacking you is all it does. The intro to another Terminator movie? No, just another day for microbes such as bacteria and archaea, which face a never-ending onslaught from viruses and invading strands of nucleic acid known as plasmids.

(more…)

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