Tag Archives: bacteria

E. Coli Bacteria Engineered to Eat Switchgrass and Make Transportation Fuels

By Guest PostDecember 4, 2011Environment, Scienceagricultural waste, anthe george, bacteria, berkeley lab, biofuel production, biofuels, blake simmons, bradley holmes, cellulolytic, cellulose, chemistry, christopher voigt, danielle tullman ercek, diesel, e coli, enzyme, eric steen, gasoline, green, gregory bokinsky, hemicellulolytic, hemicelluloses, ionic liquid, jay keasling, jbei, jeffrey dietrich, jet fuels, joint bioenergy institute, lignin, lignocellulosic biomass, lignocellulosic feedstocks, microbes, milestone, molten salt, pamela peralta yahya, renewable alternative, strains of escherichia coli bacteria, sugars, switchgrass biomass, synthesize, taek soon lee, woody material

*Joint BioEnergy Institute (JBEI) Researchers Reach Milestone on the Road to Biofuels*

A milestone has been reached on the road to developing advanced biofuels that can replace gasoline, diesel and jet fuels with a domestically-produced clean, green, renewable alternative.

Researchers with the U.S. Department of Energy (DOE)’s Joint BioEnergy Institute (JBEI) have engineered the first strains of Escherichia coli bacteria that can digest switchgrass biomass and synthesize its sugars into all three of those transportation fuels. What’s more, the microbes are able to do this without any help from enzyme additives. (more…)

A Tailored Pair of Genes

By Guest PostNovember 22, 2011Scienceagriculture, alfalfa like legume, ancestor of legumes, ancestral genes, ancient plants, asteroid, backbone of protein, bacteria, beans, cretaceous period, crop plants, demise of the dinosaurs, dinosaurs, disaster, earth, eggs, fertilizers, genes, genetically engineer legumes, genomes, humans, legumes, living together, major nutrient, medicago truncatula, model, nevin young, nitrogen, nitrogen and phosphorus fertilizer, nitrogen fixation, nitrogen fixing bacteria, nonsynthetic nitrogen fertilizer, peanuts, peas, sequencing genome, soybeans, sperm, synthetic fertilizer, university of minnesota

*For ancient plants, two genes were definitely better than one*

In the wake of the disaster that killed the dinosaurs, the ancestors of today’s crop plants reinvented themselves.

They doubled their genomes, and in that single act set the stage for feeding the world 60 million years later.

In a study published in the Nov. 16 issue of the journal Nature, researchers from the University of Minnesota and other institutions recount how sequencing the genome of a model, alfalfa-like legume revealed the monumental benefits that flowed when the ancestor of legumes acquired an extra copy of every gene. (more…)

New Mouthwash Targeting Harmful Bacteria May Render Tooth Decay A Thing of The Past

By Guest PostNovember 19, 2011Healthamericans, anti dental caries drug, antimicrobial technology, bacteria, broad spectrum antibiotics, c16g2, c3 jian inc, cavities, colgate palmolive, dental caries, experimental mouthwash, fluoride, human body, infectious diseases, microbiologist, mouthwash, no hee park, normal ecological balance, optimum health, parasitic infections, pathogenic organisms, s mutans bacteria, small scale study, smart bomb, streptococcus mutans, thomas mitchell, tooth decay, ucla, united states, wenyuan shi, yeast

A new mouthwash developed by a microbiologist at the UCLA School of Dentistry is highly successful in targeting the harmful Streptococcus mutans bacteria that is the principal cause tooth decay and cavities.

In a recent clinical study, 12 subjects who rinsed just one time with the experimental mouthwash experienced a nearly complete elimination of the S. mutans bacteria over the entire four-day testing period. The findings from the small-scale study are published in the current edition of the international dental journal Caries Research. (more…)

Berkeley Lab Researchers Create First of Its Kind Gene Map of Sulfate-reducing Bacterium: Work Holds Implications for Future Bioremediation Efforts

By Guest PostNovember 13, 2011Environment, Scienceadam arkin, aindrila mukhopadhyay, anaerobic bacterium, bacteria, berkeley lab, biofouling, bioremediation, d vulgaris, dap chip, department of energy, desulfovibrio vulgaris, dna affinity purified chip, doe, ecological niches, Environment, environmental signals, eric luning, five senses, generate enzymes, genetic secrets of a bacterium, genomic dna, how bacteria respond to environmental changes, lara rajeev, lawrence berkeley national laboratory, mapping of the genes, microbial systems, model organism, molecular signaling systems, morgan price, network of a microbe, new gene map, non hazardous forms, oil drilling, paramvir dehal, potential for removing toxic and radioactive waste, researchers, sight, smell, sound, sulfate reducing bacteria, sulfate reducing bacterium, taste, touch, toxic heavy metals and radioactive nuclides

Critical genetic secrets of a bacterium that holds potential for removing toxic and radioactive waste from the environment have been revealed in a study by researchers with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab). The researchers have provided the first ever map of the genes that determine how these bacteria interact with their surrounding environment.

“Knowing how bacteria respond to environmental changes is crucial to our understanding of how their physiology tracks with consequences that are both good, such as bioremediation, and bad, such as biofouling,” says Aindrila Mukhopadhyay, a chemist with Berkeley Lab’s Physical Biosciences Division, who led this research. “We have reported the first systematic mapping of the genes in a sulfate-reducing bacterium – Desulfovibrio vulgaris – that regulate the mechanisms by which the bacteria perceive and respond to environmental signals.” (more…)

Bacterial Communication Could Affect Earth’s Climate

By Guest PostOctober 15, 2011Environmentatmospheric carbon dioxide, bacteria, bacterial communication, benjamin van mooy, british columbia, canada, carbon cycle, carbon dioxide, clayoquot sound, climate, heat trapping greenhouse gas, laura hmelo, marine plants, microscopic bacteria, ocean, particles, particles of carbon rich detritus, phytoplankton, planet, rose kantor, source of carbon, tiny marine animals, tracy mincer, university of washington, vancouver island, vessel barnes, whoi, woods hole oceanographic institution, zooplankton

Woods Hole Oceanographic Institution (WHOI) scientists have discovered that bacterial communication could have a significant impact on the planet’s climate.

In the ocean, bacteria coalesce on tiny particles of carbon-rich detritus sinking through the depths. WHOI marine biogeochemists Laura Hmelo, Benjamin Van Mooy, and Tracy Mincer found that these bacteria send out chemical signals to discern if other bacteria are in the neighborhood. If enough of their cohorts are nearby, then bacteria en masse commence secreting enzymes that break up the carbon-containing molecules within the particles into more digestible bits. It has been suggested that coordinated expression of enzymes is very advantageous for bacteria on sinking particles, and Hmelo and her colleagues have uncovered the first proof of this in the ocean. (more…)

Scientists Identify Microbes Responsible for Consuming Natural Gas in Deepwater Horizon Spill

By Guest PostOctober 7, 2011Environmentapril spill, bacteria, cold loving bacteria, colwellia, cycloclasticus, david valentine, deepwater horizon oil spill, DNA, ecological history, ethane, geological past, gulf of mexico, methane, microbe, molly redmond, national science foundation, natural gas, oceanography, oceanospirillales, petroleum hydrocarbons, propane, psychrophilic, sequencing dna, spill, submerged plume, surface oil slicks, ucsb, university of california at santa barbara, water temperature

*Water temperature played key role*

In the results of a new study, scientists explain how they used DNA to identify microbes present in the Gulf of Mexico following the Deepwater Horizon oil spill–and the particular microbes responsible for consuming natural gas immediately after the spill.

Water temperature played a key role in the way bacteria reacted to the spill, the researchers found. (more…)

A Bug Like a Russian Doll

By Guest PostAugust 20, 2011Scienceanimal metabolism, bacteria, bacterial symbiont, bacterium, carol von dohlen, cytoplasm, dual symbiont systems, human gut, immune system, john mccutcheon, lyle buss, metabolic pathways, moranella, nested symbiosis of mealybugs, relationships between bacteria and citrus mealybugs, relationships between organisms, tremblaya

*A former UA postdoctoral fellow has discovered amazing relationships between organisms: a bacterium living inside a bacterium living inside an insect. Evolving together, the organisms depend on each other for survival, and each contributes a subset of the enzymes needed in shared metabolic pathways.*

Sure, many bacteria cause disease, but most people don’t realize how beneficial they can be. The human gut, for example, brims with bacteria that play critical roles in everything from immune system development and extracting energy from food to providing necessary nutrients.

They get a nice comfy home living inside people, and in return they help us. It’s a symbiotic relationship. However, these beneficial partnerships are nothing compared to the complex relationships between bacteria and citrus mealybugs recently discovered by a team of biologists led by former UA researcher John McCutcheon, who recently took a position as an assistant professor at the University of Montana. (more…)

Salmonella Stays Deadly With a ‘Beta Version’ of Cell Behavior

By Guest PostAugust 20, 2011Scienceabdominal, alpha form, alpha forms of amino acids, amino acid, antibiotics, bacteria, benjamin wolfe, beta lysine, betty zou, cell, common pathogen, diarrhea, ef p, fever, genes, genetically encoded amino acids, hervé roy, michael ibba, ohio state university, poxa, protein synthesis, proteins, salmonella, salmonella infection, typical cell behavior, yjek

COLUMBUS, Ohio – Salmonella cells have hijacked the protein-building process to maintain their ability to cause illness, new research suggests.

Scientists say that these bacteria have modified what has long been considered typical cell behavior by using a beta form of an amino acid – as opposed to an alpha form – during the act of making proteins. (more…)