Tag Archives: bacteria

Berkeley Lab Researchers Create First of Its Kind Gene Map of Sulfate-reducing Bacterium: Work Holds Implications for Future Bioremediation Efforts

By Guest PostNovember 13, 2011Environment, Scienceadam arkin, aindrila mukhopadhyay, anaerobic bacterium, bacteria, berkeley lab, biofouling, bioremediation, d vulgaris, dap chip, department of energy, desulfovibrio vulgaris, dna affinity purified chip, doe, ecological niches, Environment, environmental signals, eric luning, five senses, generate enzymes, genetic secrets of a bacterium, genomic dna, how bacteria respond to environmental changes, lara rajeev, lawrence berkeley national laboratory, mapping of the genes, microbial systems, model organism, molecular signaling systems, morgan price, network of a microbe, new gene map, non hazardous forms, oil drilling, paramvir dehal, potential for removing toxic and radioactive waste, researchers, sight, smell, sound, sulfate reducing bacteria, sulfate reducing bacterium, taste, touch, toxic heavy metals and radioactive nuclides

Critical genetic secrets of a bacterium that holds potential for removing toxic and radioactive waste from the environment have been revealed in a study by researchers with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab). The researchers have provided the first ever map of the genes that determine how these bacteria interact with their surrounding environment.

“Knowing how bacteria respond to environmental changes is crucial to our understanding of how their physiology tracks with consequences that are both good, such as bioremediation, and bad, such as biofouling,” says Aindrila Mukhopadhyay, a chemist with Berkeley Lab’s Physical Biosciences Division, who led this research. “We have reported the first systematic mapping of the genes in a sulfate-reducing bacterium – Desulfovibrio vulgaris – that regulate the mechanisms by which the bacteria perceive and respond to environmental signals.” (more…)

Bacterial Communication Could Affect Earth’s Climate

By Guest PostOctober 15, 2011Environmentatmospheric carbon dioxide, bacteria, bacterial communication, benjamin van mooy, british columbia, canada, carbon cycle, carbon dioxide, clayoquot sound, climate, heat trapping greenhouse gas, laura hmelo, marine plants, microscopic bacteria, ocean, particles, particles of carbon rich detritus, phytoplankton, planet, rose kantor, source of carbon, tiny marine animals, tracy mincer, university of washington, vancouver island, vessel barnes, whoi, woods hole oceanographic institution, zooplankton

Woods Hole Oceanographic Institution (WHOI) scientists have discovered that bacterial communication could have a significant impact on the planet’s climate.

In the ocean, bacteria coalesce on tiny particles of carbon-rich detritus sinking through the depths. WHOI marine biogeochemists Laura Hmelo, Benjamin Van Mooy, and Tracy Mincer found that these bacteria send out chemical signals to discern if other bacteria are in the neighborhood. If enough of their cohorts are nearby, then bacteria en masse commence secreting enzymes that break up the carbon-containing molecules within the particles into more digestible bits. It has been suggested that coordinated expression of enzymes is very advantageous for bacteria on sinking particles, and Hmelo and her colleagues have uncovered the first proof of this in the ocean. (more…)

Scientists Identify Microbes Responsible for Consuming Natural Gas in Deepwater Horizon Spill

By Guest PostOctober 7, 2011Environmentapril spill, bacteria, cold loving bacteria, colwellia, cycloclasticus, david valentine, deepwater horizon oil spill, DNA, ecological history, ethane, geological past, gulf of mexico, methane, microbe, molly redmond, national science foundation, natural gas, oceanography, oceanospirillales, petroleum hydrocarbons, propane, psychrophilic, sequencing dna, spill, submerged plume, surface oil slicks, ucsb, university of california at santa barbara, water temperature

*Water temperature played key role*

In the results of a new study, scientists explain how they used DNA to identify microbes present in the Gulf of Mexico following the Deepwater Horizon oil spill–and the particular microbes responsible for consuming natural gas immediately after the spill.

Water temperature played a key role in the way bacteria reacted to the spill, the researchers found. (more…)

A Bug Like a Russian Doll

By Guest PostAugust 20, 2011Scienceanimal metabolism, bacteria, bacterial symbiont, bacterium, carol von dohlen, cytoplasm, dual symbiont systems, human gut, immune system, john mccutcheon, lyle buss, metabolic pathways, moranella, nested symbiosis of mealybugs, relationships between bacteria and citrus mealybugs, relationships between organisms, tremblaya

*A former UA postdoctoral fellow has discovered amazing relationships between organisms: a bacterium living inside a bacterium living inside an insect. Evolving together, the organisms depend on each other for survival, and each contributes a subset of the enzymes needed in shared metabolic pathways.*

Sure, many bacteria cause disease, but most people don’t realize how beneficial they can be. The human gut, for example, brims with bacteria that play critical roles in everything from immune system development and extracting energy from food to providing necessary nutrients.

They get a nice comfy home living inside people, and in return they help us. It’s a symbiotic relationship. However, these beneficial partnerships are nothing compared to the complex relationships between bacteria and citrus mealybugs recently discovered by a team of biologists led by former UA researcher John McCutcheon, who recently took a position as an assistant professor at the University of Montana. (more…)

Salmonella Stays Deadly With a ‘Beta Version’ of Cell Behavior

By Guest PostAugust 20, 2011Scienceabdominal, alpha form, alpha forms of amino acids, amino acid, antibiotics, bacteria, benjamin wolfe, beta lysine, betty zou, cell, common pathogen, diarrhea, ef p, fever, genes, genetically encoded amino acids, hervé roy, michael ibba, ohio state university, poxa, protein synthesis, proteins, salmonella, salmonella infection, typical cell behavior, yjek

COLUMBUS, Ohio – Salmonella cells have hijacked the protein-building process to maintain their ability to cause illness, new research suggests.

Scientists say that these bacteria have modified what has long been considered typical cell behavior by using a beta form of an amino acid – as opposed to an alpha form – during the act of making proteins. (more…)

Poultry Farms that Go Organic Have Fewer Drug-Resistant Bacteria

By Guest PostAugust 14, 2011Health, Scienceamy r sapkota, antibiotic resistant enterococci, antibiotics, bacteria, bacterium and antibiotic, drug resistant enterococci bacteria, enterococci bacteria in poultry litter, enterococcus faecalis, erinna kinney, guangyu zhang, kellogg j schwab, organic poultry farms, organic practices, poultry farms, poultry houses in the mid atlantic region, r michael hulet, sam joseph, united states, us poultry farms

COLLEGE PARK, Md. — Poultry farms that have adopted organic practices and ceased using antibiotics have significantly lower levels of drug-resistant enterococci bacteria that can potentially spread to humans, according to a groundbreaking new study led by a researcher in the University of Maryland’s School of Public Health.

The study, published in Environmental Health Perspectives (online August 10, 2011), is the first to demonstrate lower levels of drug-resistant bacteria on newly organic farms in the United States and suggests that removing antibiotic use from large-scale U.S. poultry farms can result in immediate and significant reductions in antibiotic resistance for some bacteria. (more…)

Climate Adaptation of Rice

By Guest PostJuly 17, 2011Environmentbacteria, China, climate change, climate impacts on plants, developing countries, disease, dna of the rice plant, drought, dunegrass, endophytes, genetically unrelated plant species, geothermal, heat tolerant plants, microscopic fungi, minimum air temperature, native plants, natural and agricultural ecosystems, process of darwinian evolution, rice, rusty rodriguez, salt, salt tolerant, seattle, seawater, symbiogenics, symbiotic endophytes, temperature, the philippines, tiny fungi, U.S. Geological Survey

*Symbiogenics — a New Strategy for Reducing Climate Impacts on Plants*

Seattle – Rice – which provides nearly half the daily calories for the world’s population – could become adapted to climate change and some catastrophic events by colonizing its seeds or plants with the spores of tiny naturally occurring fungi, just-published U.S. Geological Survey-led research shows.

In an effort to explore ways to increase the adaptability of rice to climatic scourges such as tsunamis and tidal surges that have already led to rice shortages, USGS researchers and their colleagues colonized two commercial varieties of rice with the spores of fungi that exist naturally within native coastal (salt-tolerant) and geothermal (heat-tolerant) plants. (more…)

River Mystery Solved

By Guest PostJune 5, 2011Environmentbacteria, biofilms, biogeochemical processes, blooms of didymo, Chile, didymo, didymo growth, didymosphenia geminata, freshwater algae, mats, microbes, microenvironment, national science foundation, new zealand, nutrients, oligotrophic, oliogotrophic streams, p v sundareshwar, phosphorus, rapid creek, rivers, rock, south dakota school of mines and technology, species, streams, tim kratz, uncommon environmental phenomena, unpolluted waterways, water bodies in the southern hemisphere

*Scientists discover how “Didymo” algae bloom in pristine waters with few nutrients*

The pristine state of unpolluted waterways may be their downfall, according to research results published in a paper this week in the journal Geophysical Research Letters.

A species of freshwater algae that lives in streams and rivers, called Didymo for Didymosphenia geminata, is able to colonize and dominate the bottoms of some of the world’s cleanest waterways–precisely because they are so clear. (more…)