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E. Coli Bacteria Engineered to Eat Switchgrass and Make Transportation Fuels

By Guest PostDecember 4, 2011Environment, Scienceagricultural waste, anthe george, bacteria, berkeley lab, biofuel production, biofuels, blake simmons, bradley holmes, cellulolytic, cellulose, chemistry, christopher voigt, danielle tullman ercek, diesel, e coli, enzyme, eric steen, gasoline, green, gregory bokinsky, hemicellulolytic, hemicelluloses, ionic liquid, jay keasling, jbei, jeffrey dietrich, jet fuels, joint bioenergy institute, lignin, lignocellulosic biomass, lignocellulosic feedstocks, microbes, milestone, molten salt, pamela peralta yahya, renewable alternative, strains of escherichia coli bacteria, sugars, switchgrass biomass, synthesize, taek soon lee, woody material

*Joint BioEnergy Institute (JBEI) Researchers Reach Milestone on the Road to Biofuels*

A milestone has been reached on the road to developing advanced biofuels that can replace gasoline, diesel and jet fuels with a domestically-produced clean, green, renewable alternative.

Researchers with the U.S. Department of Energy (DOE)’s Joint BioEnergy Institute (JBEI) have engineered the first strains of Escherichia coli bacteria that can digest switchgrass biomass and synthesize its sugars into all three of those transportation fuels. What’s more, the microbes are able to do this without any help from enzyme additives. (more…)

WHOI Teaming with Flatley Discovery Lab in Search for Effective Treatments for Cystic Fibrosis

By Guest PostOctober 13, 2011Health, Scienceantibiotics, biological and chemical processes of ocean microbes, cf, cftr, cftr gene, charlestown, chemical extracts, cystic fibrosis, cystic fibrosis trans-membrane conductance regulator, flatley discovery lab, fungi, gene, john flatley, marine actinomycetes, marine microbes, marine microbial extracts, membrane, microbes, microbial infection biofilm, mutation, phytoplankton, respiratory disease, richard fitzpatrick, sodium transport, susan k. avery, therapeutic agents for cystic fibrosis, tracy mincer, whoi, woods hole oceanographic institution

The Woods Hole Oceanographic Institution (WHOI) has signed a $1.18 million agreement with the Flatley Discovery Lab in Charlestown, Mass., to investigate and supply marine microbial extracts as possible treatments for cystic fibrosis (CF).

The life-shortening respiratory disease has eluded attempts at a cure, although researchers have been successful in some cases at adding years to a person’s lifespan, primarily through treatment with antibiotics. (more…)

Microbes Generate Electricity While Cleaning Up Nuclear Waste

By Guest PostSeptember 8, 2011Environmentallison speers, conductive pili, dena cologgi, electricity, environmental disasters, gemma reguera, geobacter bacteria, groundwater, michigan state university, microbes, microbial fuel cells, microorganisms, nanowires, nuclear contamination, nuclear waste, polluted sites, production of nuclear fuel, radioactive material, sanela lampa pastirk, shelly kelly, toxic metals, uranium

EAST LANSING, Mich. — Researchers at Michigan State University have unraveled the mystery of how microbes generate electricity while cleaning up nuclear waste and other toxic metals.

Details of the process, which can be improved and patented, are published in the current issue of the Proceedings of the National Academy of Sciences. The implications could eventually benefit sites forever changed by nuclear contamination, said Gemma Reguera, MSU microbiologist. (more…)

WHOI Study Reports Microbes Consumed Oil in Gulf Slick at Unexpected Rates

By Guest PostAugust 4, 2011Environmentbacterial microbes, benjamin van mooy, bethanie edwards, breaking down the oil slick, catherine a carmichael, christopher m reddy, deepwater horizon spill, dilution, dispersion, evaporation, gulf of mexico, gulf waters, krista longnecker, largest oil spill in history, macondo well, metabolic potential, microbes, new cells, nitrogen, nutrients, oil consumption by the microbes, oxygen levels in water samples, oxygen optode, oxygen to create carbon dioxide and energy, phosphorus, richard camilli, sensor, state of the art methods, surface oil slick, whoi, woods hole oceanographic institution

More than a year after the largest oil spill in history, perhaps the dominant lingering question about the Deepwater Horizon spill is, “What happened to the oil?” Now, in the first published study to explain the role of microbes in breaking down the oil slick on the surface of the Gulf of Mexico, Woods Hole Oceanographic Institution (WHOI) researchers have come up with answers that represent both surprisingly good news and a head-scratching mystery.

In research scheduled to be published in the Aug. 2 online edition of Environmental Research Letters, the WHOI team studied samples from the surface oil slick and surrounding Gulf waters. They found that bacterial microbes inside the slick degraded the oil at a rate five times faster than microbes outside the slick—accounting in large part for the disappearance of the slick some three weeks after Deepwater Horizon’s Macondo well was shut off. (more…)

River Mystery Solved

By Guest PostJune 5, 2011Environmentbacteria, biofilms, biogeochemical processes, blooms of didymo, Chile, didymo, didymo growth, didymosphenia geminata, freshwater algae, mats, microbes, microenvironment, national science foundation, new zealand, nutrients, oligotrophic, oliogotrophic streams, p v sundareshwar, phosphorus, rapid creek, rivers, rock, south dakota school of mines and technology, species, streams, tim kratz, uncommon environmental phenomena, unpolluted waterways, water bodies in the southern hemisphere

*Scientists discover how “Didymo” algae bloom in pristine waters with few nutrients*

The pristine state of unpolluted waterways may be their downfall, according to research results published in a paper this week in the journal Geophysical Research Letters.

A species of freshwater algae that lives in streams and rivers, called Didymo for Didymosphenia geminata, is able to colonize and dominate the bottoms of some of the world’s cleanest waterways–precisely because they are so clear. (more…)

Kartchner Caverns: A Living Microbe Laboratory

By Guest PostMay 20, 2011Sciencecave, colonies of microbes, kartchner caverns, microbe laboratory, microbes, microbes in caves

In the first extensive genetic survey of microbes living in Kartchner Caverns, UA doctoral candidate Marian Ortiz has shown that some of the cave-dwelling microbes may have anti-microbial and anti-fungal properties

In a hole in the ground, there lives a microbe. Actually, there live several microbes. What are they and how do they survive in conditions practically devoid of resources or other forms of life? (more…)

Circadian Rhythms Spark Plants’ Ability to Survive Freezing Weather

By Guest PostApril 14, 2011Scienceabiotic stresses, agbioresearch, bioenergy crops, circadian clock, circadian cues, circadian rhythms, eva farré, freezing weather, malia dong, michael thomashow, microbes, molecular genetics, monarch butterflies, national academy of sciences, renewal biofuels, spark plants

EAST LANSING, Mich. — Just as monarch butterflies depend on circadian cues to begin their annual migration, so do plants to survive freezing temperatures.

All living things – humans, animals, plants, microbes – are influenced by circadian rhythms, which are physical, mental and behavioral changes that follow a 24-hour cycle. In the current issue of the Proceedings of the National Academy of Sciences, Michael Thomashow, University Distinguished Professor of molecular genetics, along with MSU colleagues Malia Dong and Eva Farré, has identified that the circadian clock provides key input required for plants to attain maximum freezing tolerance. (more…)

Ocean Acidification Changes Nitrogen Cycling in World Seas

By Guest PostDecember 22, 20101 commentEnvironmentacidity, ammonia oxidizers, blue whales, carbon dioxide, cheryl emiliane chow, cycle, david garrison, marine ecosystems, michael beman, microbes, nitrification, nitrogen, nitrous oxide, nutrients, ocean acidification, oceanic nitrification, oceans, organisms, proteins, sea water

*New results indicate potential to reduce certain greenhouse gas emissions from oceans to atmosphere*

Increasing acidity in the sea’s waters may fundamentally change how nitrogen is cycled in them, say marine scientists who published their findings in this week’s issue of the journal Proceedings of the National Academy of Sciences (PNAS).

Nitrogen is one of the most important nutrients in the oceans. All organisms, from tiny microbes to blue whales, use nitrogen to make proteins and other important compounds. (more…)

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