Tag Archives: water molecules

Science Benefits From Diverse Landing Area of NASA Mars Rover

PASADENA, Calif. — NASA’s Curiosity rover is revealing a great deal about Mars, from long-ago processes in its interior to the current interaction between the Martian surface and atmosphere.

Examination of loose rocks, sand and dust has provided new understanding of the local and global processes on Mars. Analysis of observations and measurements by the rover’s science instruments during the first four months after the August 2012 landing are detailed in five reports in the Sept. 27 edition of the journal Science. (more…)

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Computer modeling shows crucial function of water molecules in proteins

Using molecular simulations that modeled a potassium channel and its immediate cellular environment, atom for atom, UChicago scientists have discovered that just 12 molecules of water cause the long post-activation recovery period required by such ion channels before they can function again. The research has revealed a new mechanism in the function of a nearly universal biological structure that will have broad implications, ranging from fundamental biology to the design of pharmaceuticals.

“Our research clarifies the nature of this previously mysterious inactivation state. This gives us better understanding of fundamental biology and should improve the rational design of drugs, which often target the inactivated state of channels,” said Benoît Roux, professor of biochemistry and molecular biology, whose team’s findings were published online July 28 in Nature. (more…)

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New analysis suggests wind, not water, formed mound on Mars

A roughly 3.5-mile high Martian mound that scientists suspect preserves evidence of a massive lake might actually have formed as a result of the Red Planet’s famously dusty atmosphere, an analysis of the mound’s features suggests. If correct, the research could dilute expectations that the mound holds evidence of a large body of water, which would have important implications for understanding Mars’ past habitability.

Researchers based at Princeton University and the California Institute of Technology suggest that the mound, known as Mount Sharp, most likely emerged as strong winds carried dust and sand into the 96-mile-wide crater in which the mound sits. They report in the journal Geology that air likely rises out of the massive Gale Crater when the Martian surface warms during the day, then sweeps back down its steep walls at night. Though strong along the Gale Crater walls, these “slope winds” would have died down at the crater’s center where the fine dust in the air settled and accumulated to eventually form Mount Sharp, which is close in size to Alaska’s Mt. McKinley. (more…)

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A Dual Look at Photosystem II Using the World’s Most Powerful X-Ray Laser

Berkeley Lab and SLAC Researchers Demonstrate Room Temperature Simultaneous Diffraction/Spectroscopy of Metalloenzymes

From providing living cells with energy, to nitrogen fixation, to the splitting of water molecules, the catalytic activities of metalloenzymes – proteins that contain a metal ion – are vital to life on Earth. A better understanding of the chemistry behind these catalytic activities could pave the way for exciting new technologies, most prominently artificial photosynthesis systems that would provide  clean, green and renewable energy. Now, researchers with the U.S. Department of Energy (DOE)’s Lawrence Berkeley National Laboratory (Berkeley Lab) and the SLAC National Accelerator Laboratory have taken a major step towards achieving this goal.

Using ultrafast, intensely bright pulses of X-rays from SLAC’s Linac Coherent Light Source (LCLS), the world’s most powerful X-ray laser, the researchers were able to simultaneously image at room temperature the atomic and electronic structures of photosystem II, a metalloenzyme critical to photosynthesis. (more…)

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How Computers Push on the Molecules They Simulate

Berkeley Lab bioscientists and their colleagues decipher a far-reaching problem in computer simulations

Because modern computers have to depict the real world with digital representations of numbers instead of physical analogues, to simulate the continuous passage of time they have to digitize time into small slices. This kind of simulation is essential in disciplines from medical and biological research, to new materials, to fundamental considerations of quantum mechanics, and the fact that it inevitably introduces errors is an ongoing problem for scientists.

Scientists at the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) have now identified and characterized the source of tenacious errors and come up with a way to separate the realistic aspects of a simulation from the artifacts of the computer method. The research was done by David Sivak and his advisor Gavin Crooks in Berkeley Lab’s Physical Biosciences Division and John Chodera, a colleague at the California Institute of Quantitative Biosciences (QB3) at the University of California at Berkeley. The three report their results in Physical Review X. (more…)

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NASA Mars Rover Fully Analyzes First Soil Samples

PASADENA, Calif. – NASA’s Mars Curiosity rover has used its full array of instruments to analyze Martian soil for the first time, and found a complex chemistry within the Martian soil. Water and sulfur and chlorine-containing substances, among other ingredients, showed up in samples Curiosity’s arm delivered to an analytical laboratory inside the rover.

Detection of the substances during this early phase of the mission demonstrates the laboratory’s capability to analyze diverse soil and rock samples over the next two years. Scientists also have been verifying the capabilities of the rover’s instruments. (more…)

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Diamonds and Dust for Better Cement

Structural studies at Berkeley Lab’s Advanced Light Source could point to reduced carbon emissions and stronger cements

It’s no surprise that humans the world over use more water, by volume, than any other material. But in second place, at over 17 billion tons consumed each year, comes concrete made with Portland cement. Portland cement provides the essential binder for strong, versatile concrete; its basic materials are found in many places around the globe; and, at about $100 a ton, it’s relatively cheap. Making it, however, releases massive amounts of carbon dioxide, accounting for more than five percent of the total CO2 emissions from human activity.

“Portland cement is the most important building material in the world,” says Paulo Monteiro, a professor of civil and environmental engineering at the University of California at Berkeley, “but if we are going to find ways to use it more efficiently – or just as important, search for practical alternatives – we need a full understanding of its structure on the nanoscale.” To this end Monteiro has teamed with researchers at the U.S. Department of Energy’s Advanced Light Source (ALS) at Lawrence Berkeley National Laboratory. (more…)

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Novel Nanoparticle Mimicking Virus Offers New Route to Gene Therapy

Researchers at Yale University have developed a novel nanoparticle with promising applications in gene therapy, a type of medical treatment that addresses the root causes of diseases now typically treated for symptoms.

The advance could lead to new therapies for many forms of cancer, including brain tumors, as well as for cystic fibrosis and Huntington’s Disease. (more…)

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