Tag Archives: dna molecules

Bacteria Take “RNA Mug Shots” of Threatening Viruses

AUSTIN, Texas — Scientists from The University of Texas at Austin, the Stanford University School of Medicine and two other institutions have discovered that bacteria have a system that can recognize and disrupt dangerous viruses using a newly identified mechanism involving ribonucleic acid (RNA). It is similar to the CRISPR/Cas system that captures foreign DNA. The discovery might lead to better ways to thwart viruses that kill agricultural crops and interfere with the production of dairy products such as cheese and yogurt. (more…)

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The final nail in the Jurassic Park coffin

It is hardly possible to talk about fossil insects in amber without the 1993 movie Jurassic Park entering the debate.

The idea of recreating dinosaurs by extracting DNA from insects in amber has held the fascination of the public for two decades. Claims for successful extraction of DNA from ambers up to 130 million-years-old by various scientists in the early 1990s were only seriously questioned when a study at the Natural History Museum, London, was unable to replicate the process. The original claims are now considered by many to be a text-book example of modern contaminant DNA in the samples. Nonetheless, some scientists hold fast to their original claims.

Research just published in the journal The Public Library of Science ONE (PLOS ONE) by a team of researchers from the Faculty of Life Sciences at The University of Manchester can now confirm that the existence of DNA in amber fossils is highly unlikely. The team led by amber expert Dr David Penney and co-ordinated by ancient DNA expert Professor Terry Brown used highly-sensitive ‘next generation’ sequencing techniques – the most advance type of DNA sequencing – on insects in copal, the sub-fossilized resin precursor of amber. (more…)

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Nanopore Sequencing: DNA Prefers to Dive Head First into Nanopores

In the 1960s, Nobel laureate Pierre-Gilles de Gennes postulated that someday researchers could test his theories of polymer networks by observing single molecules. Researchers at Brown observed single molecules of DNA being drawn through nanopores by electrical current and figured out why they most often travel head first.

PROVIDENCE, R.I. [Brown University] — If you want to understand a novel, it helps to start from the beginning rather than trying to pick up the plot from somewhere in the middle. The same goes for analyzing a strand of DNA. The best way to make sense of it is to look at it head to tail.

Luckily, according to a new study by physicists at Brown University, DNA molecules have a convenient tendency to cooperate. (more…)

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Training Your Robot the PaR-PaR Way

Berkeley Lab and JBEI Researchers Develop a Biology-Friendly Robot Programming Language

Teaching a robot a new trick is a challenge. You can’t reward it with treats and it doesn’t respond to approval or disappointment in your voice. For researchers in the biological sciences, however, the future training of robots has been made much easier thanks to a new program called “PaR-PaR.”

Nathan Hillson, a biochemist at the U.S. Department of Energy (DOE)’s Joint BioEnergy Institute (JBEI), led the development of PaR-PaR, which stands for Programming a Robot. PaR-PaR is a simple high-level, biology-friendly, robot-programming language that allows researchers to make better use of liquid-handling robots and thereby make possible experiments that otherwise might not have been considered. (more…)

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