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Synchrotron Infrared Unveils a Mysterious Microbial Community

By Guest PostJanuary 31, 2013Science16s rrna gene, acid mine runoff, advanced light source, alexander probst, als, ancient things, another amazing lifestyle, archaea, bacteria, barbs, berkeley lab, biochemistry, biofilm, black smokers, boiling hot springs, bsisb, carbon, christine moissl eichinger, common hydrocarbon, deep sea, deepwater horizon, dna microarray, extremophiles, fatty acids, fourier transform, functional groups, giovanni birarda, gulf of mexico, hami, hami protein, hoi-ying Holman, hooks, hydrogen atoms, infrared spectromicroscopy, inhospitable environments, jet propulsion laboratory, kasthuri venkateswaran, latin, long alkylic chains, lovers, membrane lipids, microbe samples, muehlbacher schwefelquelle, mysterious microbial community, NASA, oil plume, oil spill research, phylochip, protein strands, second genome, sippenauer moor, sm1 euryarchaeon, sm1 research team, southern germany, sr ftir, strings of pearls, sulfur springs, synchrotron ftir, synchrotron infrared, synchrotron radiation, syntrophic, todd desantis, university of regensburg

Berkeley Lab scientists join an international collaboration to understand how archaea and bacteria work together deep in a cold sulfur spring

In the fall of 2010, Hoi-Ying Holman of the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) was approached by an international team researching a mysterious microbial community discovered deep in cold sulfur springs in southern Germany.

“They told me what they were doing and said, ‘We know what you contributed to the oil-spill research,’” recalls Holman, who heads the Chemical Ecology group in Berkeley Lab’s Earth Sciences Division. “They wondered if I could help them determine the biochemistry of their microbe samples.” (more…)

Scientists Develop Technology Revolutionizing Single-Cell Studies

By Guest PostOctober 28, 2011Sciencearchaea, bacteria in the human body, bacterial infections, bacterial pathogenesis, deep sea, global gene expression, j craig venter institute, laser tweezers system, microarrays, microbial cells lacking a nucleus, novel technology, prokaryotes, rna seq, rna sequencing, single bacterium, single cell transcriptomics, snyder hall laboratory, stuart p donachie, tung t hoang, university of hawaii at manoa, yun kang

Researchers at the University of Hawaiʻi at Mānoa, in collaboration with scientists at the J. Craig Venter Institute, have made a significant breakthrough in developing a novel technology to investigate global gene-expression in a single bacterium. The team, led by Associate Professors Tung T. Hoang and Stuart P. Donachie, recently published a paper describing the technology in Genome Research (21:925-935), a premier international genome journal. UH Mānoa postdoctoral researcher Dr. Yun Kang, who performed this research in a Snyder Hall laboratory, contributed significantly and worked diligently to overcome the numerous technical challenges presented. (more…)

It Takes a Community of Soil Microbes to Protect Plants From Disease

By Guest PostMay 15, 2011Environment, Scienceactinobacteria, archaea, bacteria, berkeley lab, burkholderia, complex microbial network, coral reefs, deepwater horizon spill, disease, dna sequences, dutch scientists, environmental mysteries, gary andersen, gulf of mexico, immune system, mammals, pathogens, phylochip, plants, potato, psuedomonas, puerto rico, rathmann family foundation, rhizoctonia solani, rice, root fungus, soil, soil microbes, sugar beet, todd desantis, types of bacteria, vegetables, xanthomonas, yvette piceno

*Berkeley Lab scientists decipher immune system for plants beneath our feet*

Those vegetables you had for dinner may have once been protected by an immune system akin to the one that helps you fight disease. Scientists from the U.S. Department of Energy’s Lawrence Berkeley National Laboratory (Berkeley Lab) and the Netherland’s Wageningen University found that plants rely on a complex community of soil microbes to defend themselves against pathogens, much the way mammals harbor a raft of microbes to avoid infections.

The scientists deciphered, for the first time, the group of microbes that enables a patch of soil to suppress a plant-killing pathogen. Previous research on the phenomenon of disease-suppressive soil had identified one or two pathogen-fighting microbes at work. (more…)

Scientists identify key enzyme in microbial immune system

By Guest PostSeptember 10, 20102 commentsSciencearchaea, bacteria, berkeley lab, Bill and Melinda Gates foundation, clustered regularly interspaced short palindromic repea, crispr, crrna molecule, csy4 enzyme, DNA, doudna group, genetic element, jennifer doudna, microbes, movie, nucleic acid, nucleic acid-based immune system, plasmids, rachel haurwitz, terminator

Imagine a war in which you are vastly outnumbered by an enemy that is utterly relentless – attacking you is all it does. The intro to another Terminator movie? No, just another day for microbes such as bacteria and archaea, which face a never-ending onslaught from viruses and invading strands of nucleic acid known as plasmids.

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Tag Archives: archaea

Synchrotron Infrared Unveils a Mysterious Microbial Community

Scientists Develop Technology Revolutionizing Single-Cell Studies

It Takes a Community of Soil Microbes to Protect Plants From Disease

Scientists identify key enzyme in microbial immune system